Moist Gluten-Free Chocolate Chip Muffins Recipe

These bakery-style gluten-free chocolate chip muffins are light, fluffy, and packed with mini chocolate chips. They’re a perfect brunch favorite!

Bakery style gluten-free chocolate chip muffins with a bottle of milk

This gluten-free muffin recipe is truly exceptional.

These are gluten-free, bakery-style chocolate chip muffins with tall, domed tops, a tender, airy crumb, and mini chocolate chips in every bite. They look beautiful, taste even better, and are perfect for weekend brunch, a special breakfast, or an afternoon treat.

I tested this recipe until it delivered everything I wanted: impressive rise, a soft center, and lots of chocolate. The result has earned rave reviews from everyone who’s tried it.

Best of all, this easy gluten-free muffin recipe uses straightforward ingredients you may already have on hand.

Ingredients for gluten-free chocolate chip muffins

Start With Simple Ingredients

The ingredients for these gluten-free muffins are familiar, with one or two choices that make a noticeable difference in texture and flavor. Here’s what matters:

  • Gluten-free measure-for-measure flour — Use a 1:1 gluten-free flour blend that includes xanthan gum for structure. If your blend lacks xanthan gum, the muffins will not set properly.
  • Baking powder & baking soda — Fresh leaveners are important to achieve the tall, airy rise these muffins are known for.
  • Kosher salt — If using table salt, reduce the amount slightly to avoid over-salting.
  • Melted butter — Butter gives rich flavor and helps the base taste delicious without relying on many add-ins.
  • Granulated sugar — Provides sweetness and promotes a golden exterior.
  • Eggs — Room-temperature eggs blend smoothly with melted butter; cold eggs risk causing the butter to seize.
  • Sour cream — Adds tang and acidity, which reacts with the leaveners to create a light, tender crumb.
  • Heavy cream — Higher fat than milk, heavy cream keeps the muffins moist and tender. Using milk can make the crumb drier unless additional fat is added.
  • Vanilla — Plenty of vanilla enhances the overall flavor.
  • Mini chocolate chips — Small chips distribute evenly through the batter and are less likely to sink, so each bite has chocolate.
  • Coarse sugar & extra chips — A sprinkle of coarse sugar and a few extra mini chips on top create a bakery-style finish.

How To Make Gluten-Free Chocolate Chip Muffins, Step By Step

The full recipe with quantities and tips appears in the recipe card below.

making chocolate chip muffins step by step
  1. Combine dry ingredients. Whisk the gluten-free flour blend, baking powder, baking soda, and kosher salt in a medium bowl and set aside.
  2. Combine butter & sugar. In a large bowl, mix the melted butter and granulated sugar until blended.
  3. Add eggs & vanilla. Add the eggs one at a time, mixing well after each addition, then stir in the vanilla.
  4. Mix in sour cream & heavy cream. Fold in the sour cream until smooth, then stir in the heavy cream.
  5. Combine wet and dry. Gently fold the dry ingredients into the wet until only a few dry streaks remain.
  6. Stir in chocolate chips. Fold in 1/2 cup mini chocolate chips until the batter is smooth and the chips are evenly distributed.
  7. Let the batter rest. Rest the batter at room temperature for at least 1 hour (up to 2 hours) or refrigerate overnight. Resting hydrates the flour and lets the batter aerate for a taller rise.
  8. Preheat oven & prepare pan. Preheat the oven to 425°F and line a 12-cup muffin pan with parchment liners.
  9. Scoop & top. Use a large scoop to fill each muffin cup generously. Add about 1 teaspoon extra mini chips and a sprinkle of coarse sugar on top of each muffin.
  10. Bake. Bake at 425°F for 5 minutes, then reduce the oven to 350°F and bake 10–12 more minutes, until the tops are light golden and a toothpick comes out with a few moist crumbs but no wet batter.
  11. Cool. Let the muffins sit in the pan for 2–3 minutes, then transfer to a wire rack to finish cooling.
gluten-free chocolate chip muffins on a wire rack
Gluten-free chocolate chip muffins cut in half to show a fluffy center

Tricks For The Best Bakery-Style Gluten-Free Chocolate Chip Muffins

The keys to getting bakery-style muffins are an airy crumb and a high, dramatic rise. Here are the most important techniques:

Let the batter rest

Resting the batter for at least one hour hydrates the flour and gives the leavening agents time to react. This produces a taller, lighter muffin. You can rest the batter at room temperature for up to two hours or refrigerate overnight; if chilled, bring the batter back to room temperature before baking for best results.

Adjust the temperature

Starting at a higher oven temperature (425°F) encourages rapid rise, then lowering the oven encourages even baking so the centers finish without over-browning the tops.

Choose the best muffin pan & liners

A light-colored metal pan bakes evenly and avoids scorching. Dark pans can brown too quickly, and silicone won’t brown as well. Parchment liners are ideal for easy release and a clean edge.

Make them pretty

Top each muffin with extra mini chips and a sprinkle of coarse sugar (turbinado or demerara) before baking for that bakery finish. A light dusting of powdered sugar just before serving is optional.

bakery style gluten-free chocolate chip muffin with mini chocolate chips

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Recipe Card

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bakery style gluten-free chocolate chip muffin with mini chocolate chips

Gluten-Free Chocolate Chip Muffins


5 Stars 4 Stars 3 Stars 2 Stars 1 Star

5 from 10 reviews

  • Author: Emily Dixon, Sweets & Thank You


  • Total Time:
    1 hour 25 minutes


  • Yield:
    12 Muffins


  • Diet:
    Gluten Free
Print Recipe

Description

These bakery-style gluten-free chocolate chip muffins have a light, fluffy texture, sky-high muffin tops, and are packed with mini chocolate chips.


Ingredients


Scale

For the dry ingredients:

  • 2 1/2 cups (300 g) gluten-free measure-for-measure flour, weighed or scooped and leveled
  • 1 Tablespoon baking powder
  • 1/2 teaspoon baking soda
  • 1/2 teaspoon kosher salt

For the wet ingredients:

  • 1/2 cup (8 Tbsp / 4 oz) butter, melted
  • 1 cup (200 g) granulated sugar
  • 3 large eggs, room temperature
  • 1 Tablespoon vanilla extract or paste
  • 3/4 cup (170 g) sour cream
  • 3/4 cup (178 ml) heavy cream
  • 1/2 cup (3 oz / 85 g) mini chocolate chips

To top the muffins:

  • 1/4 cup (1.5 oz / 43 g) mini chocolate chips
  • 2 Tablespoons coarse sugar (turbinado or demerara)

Instructions

  1. Combine dry ingredients. Whisk the gluten-free flour, baking powder, baking soda, and kosher salt in a medium bowl. Set aside.
  2. Combine butter & sugar. In a large mixing bowl, combine the melted butter and sugar.
  3. Add eggs & vanilla. Add the eggs one at a time, beating to fully incorporate each before adding the next. Mix in the vanilla.
  4. Mix in sour cream & heavy cream. Stir in the sour cream until combined, then add the heavy cream and mix until smooth.
  5. Add dry ingredients to wet. Gently fold the dry ingredients into the wet until only a few dry streaks remain.
  6. Mix in the chocolate chips. Fold in 1/2 cup mini chocolate chips until the batter is smooth and chips are evenly distributed.
  7. Let the batter rest. Rest the batter at room temperature for at least 1 hour (up to 2 hours) or refrigerate overnight. Resting hydrates the flour and improves rise.
  8. Preheat the oven & prep the pan. While the batter rests, preheat the oven to 425°F and line a 12-cup muffin pan with parchment liners.
  9. Scoop & top. Use a large scoop to fill each muffin cup completely. Top each with about 1 teaspoon extra mini chips and a sprinkle of coarse sugar.
  10. Bake the muffins. Bake at 425°F for 5 minutes, then lower the oven to 350°F and bake 10–12 more minutes, until light golden and set. A toothpick should come out with a few moist crumbs but no wet batter.
  11. Cool the muffins. Let the muffins cool in the pan 2–3 minutes, then transfer to a wire rack to finish cooling.
  12. Serve & store. Enjoy warm or store at room temperature in an airtight container for up to 2 days (a few seconds in the microwave refreshes them). Freeze up to 2 months.

Notes

  • Let the batter rest. Resting hydrates the flour and improves rise; one hour at room temperature is recommended. You may rest up to two hours or refrigerate overnight. If chilled, bring the batter back to room temperature before baking.
  • Flour recommendation. A reliable measure-for-measure gluten-free flour blend that contains xanthan gum yields the best results. Do not substitute almond or coconut flour. For accuracy, weigh the flour when possible or use the scoop-and-level method to avoid packing extra flour.
  • Prep Time: 10 minutes
  • Rest Time: 1 hour
  • Cook Time: 15 minutes
  • Category: Breakfast
  • Method: Oven
  • Cuisine: American

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